Se connecter
Intranet
Thème

Présentation

Pascal Barbry is Directeur de Recherche at the CNRS and holds the Chair “Human Lung Cell Atlas” at 3IA Côte d’Azur. He graduated from the École Polytechnique and completed his PhD in Molecular and Cellular Pharmacology at the University of Nice Sophia Antipolis. He was a Visiting Scientist at the University of California, San Francisco (Cardiovascular Research Institute) earlier in his career, working on epithelial ion transport (Dalemans, 1991; Gribkoff 1994; Lingueglia 1993,1994). He has created and leads since 1999 the Physiologie Génomique des Eucaryotes research group at the Institut de Pharmacologie Moléculaire et Cellulaire (IPMC, CNRS–Université Côte d’Azur). His team combines cutting‑edge genomics, single‑cell and spatial transcriptomics approaches to decipher respiratory biology, lung disease mechanisms, and epithelial physiology. He contributed to establish the first version of the human lung cell atlas (Revinski, 20218; Deprez, 2020; Sikkema, 2023). Pascal Barbry is also the creator and head of UCA GenomiX, a genomics platform of France Génomique supporting high‑throughput sequencing, bioinformatics, and epidemiological genomics. In response to the COVID‑19 pandemic, his group pioneered advanced genomic methods for wastewater‑based epidemiology, developing and validating pipelines for SARS‑CoV‑2 detection, variant tracking, and viral diversity analysis in sewage networks (Rios 2021) in collaboration with Veolia and local authorities. This work has provided a sensitive, high‑resolution community‑level picture of viral spread and variant emergence, complementing clinical surveillance. He served as Director of the IPMC (2004–2017), fostering multi‑omic and quantitative biology research, and as President of the Canceropole PACA (2019-2025). Scientific Director of the Institut Hospitalo‑Universitaire (IHU) RespirERA in Nice since May 2024, he also coordinates the Equipex 4D‑OMICS infrastructure project, and chairs the Scientific Council of Vaincre la Mucoviscidose. An internationally recognized scientist, he has authored over 185 peer‑reviewed publications with broad impact in genomics, respiratory biology, and epidemic surveillance (h‑index 81, source Google Scholar).

Publications

2024
Truchi M, Lacoux C, Gille C, Fassy J, Magnone V, Lopes Goncalves R, Girard-Riboulleau C, Manosalva-Pena I, Gautier-Isola M, Lebrigand K, Barbry P, Spicuglia S, Vassaux G, Rezzonico R, Barlaud M, Mari B, Detecting subtle transcriptomic perturbations induced by lncRNAs knock-down in single-cell CRISPRi screening using a new sparse supervised autoencoder neural network., Front Bioinform 2024 ; 4(): 1340339.
2018
Peter J, De Chiara M, Friedrich A, Yue JX, Pflieger D, Bergström A, Sigwalt A, Barre B, Freel K, Llored A, Cruaud C, Labadie K, Aury JM, Istace B, Lebrigand K, Barbry P, Engelen S, Lemainque A, Wincker P, Liti G, Schacherer J, Genome evolution across 1,011 Saccharomyces cerevisiae isolates., Nature 2018 Apr; 556(7701): 339-344.
2017
Bottini S, Hamouda-Tekaya N, Mategot R, Zaragosi LE, Audebert S, Pisano S, Grandjean V, Mauduit C, Benahmed M, Barbry P, Repetto E, Trabucchi M, Post-transcriptional gene silencing mediated by microRNAs is controlled by nucleoplasmic Sfpq., Nat Commun 2017 Oct; 8(1): 1189.
2017
Mercey O, Popa A, Cavard A, Paquet A, Chevalier B, Pons N, Magnone V, Zangari J, Brest P, Zaragosi LE, Ponzio G, Lebrigand K, Barbry P, Marcet B, Characterizing isomiR variants within the microRNA-34/449 family., FEBS Lett 2017 Mar; 591(5): 693-705.
2016
Beclin C, Follert P, Stappers E, Barral S, Coré N, de Chevigny A, Magnone V, Lebrigand K, Bissels U, Huylebroeck D, Bosio A, Barbry P, Seuntjens E, Cremer H, miR-200 family controls late steps of postnatal forebrain neurogenesis via Zeb2 inhibition., Sci Rep 2016 Oct; 6(): 35729.
2016
Mercey O, Kodjabachian L, Barbry P, Marcet B, MicroRNAs as key regulators of GTPase-mediated apical actin reorganization in multiciliated epithelia., Small GTPases 2016 Apr; 7(2): 54-8.
2016
Popa A, Lebrigand K, Barbry P, Waldmann R, Pateamine A-sensitive ribosome profiling reveals the scope of translation in mouse embryonic stem cells., BMC Genomics 2016 Jan; 17(): 52.
2015
Repetto E, Lichtenstein L, Hizir Z, Tekaya N, Benahmed M, Ruidavets JB, Zaragosi LE, Perret B, Bouchareychas L, Genoux A, Lotte R, Ruimy R, Ferrières J, Barbry P, Martinez LO, Trabucchi M, RNY-derived small RNAs as a signature of coronary artery disease., BMC Med 2015 Oct; 13(): 259.
2015
Chevalier B, Adamiok A, Mercey O, Revinski DR, Zaragosi LE, Pasini A, Kodjabachian L, Barbry P, Marcet B, miR-34/449 control apical actin network formation during multiciliogenesis through small GTPase pathways., Nat Commun 2015 Sep; 6(): 8386.
2015
Cibois M, Luxardi G, Chevalier B, Thomé V, Mercey O, Zaragosi LE, Barbry P, Pasini A, Marcet B, Kodjabachian L, BMP signalling controls the construction of vertebrate mucociliary epithelia., Development 2015 Jul; 142(13): 2352-63.
2011
Marcet B, Chevalier B, Coraux C, Kodjabachian L, Barbry P, MicroRNA-based silencing of Delta/Notch signaling promotes multiple cilia formation., Cell Cycle 2011 Sep; 10(17): 2858-64.
2003
Dayem MA, Moreilhon C, Turchi L, Magnone V, Christen R, Ponzio G, Barbry P, Early gene expression in wounded human keratinocytes revealed by DNA microarray analysis., Comp Funct Genomics 2003 ; 4(1): 47-55.