Virginie MAGNONE – IPMC

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Géraldine RIOS

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Publications

Redman E, Fierville M, Cavard A, Plaisant M, Arguel MJ, Ruiz Garcia S, McAndrew EM, Girard-Riboulleau C, Lebrigand K, Magnone V, Ponzio G, Gras D, Chanez P, Abelanet S, Barbry P, Marcet B, Zaragosi LE, Cell Culture Differentiation and Proliferation Conditions Influence the In Vitro Regeneration of the Human Airway Epithelium., Am J Respir Cell Mol Biol 2024 Sep; 71(3): 267-281.

Kypraios A, Bennour J, Imbert V, David L, Calvo J, Pflumio F, Bonnet R, Couralet M, Magnone V, Lebrigand K, Barbry P, Rohrlich PS, Peyron JF, Identifying Candidate Gene Drivers Associated with Relapse in Pediatric T-Cell Acute Lymphoblastic Leukemia Using a Gene Co-Expression Network Approach., Cancers (Basel) 2024 Apr; 16(9): .

Zaragosi LE, Gouleau A, Delin M, Lebrigand K, Arguel MJ, Girard-Riboulleau C, Rios G, Redman E, Plaisant M, Waldmann R, Magnone V, Marcet B, Barbry P, Ponzio G, Combination of CRISPR-Cas9-RNP and Single-Cell RNAseq to Identify Cell State-Specific FOXJ1 Functions in the Human Airway Epithelium., Methods Mol Biol 2024 ; 2725(): 1-25.

Truchi M, Lacoux C, Gille C, Fassy J, Magnone V, Lopes Goncalves R, Girard-Riboulleau C, Manosalva-Pena I, Gautier-Isola M, Lebrigand K, Barbry P, Spicuglia S, Vassaux G, Rezzonico R, Barlaud M, Mari B, Detecting subtle transcriptomic perturbations induced by lncRNAs knock-down in single-cell CRISPRi screening using a new sparse supervised autoencoder neural network., Front Bioinform 2024 ; 4(): 1340339.

Daniela Matuozzo, Estelle Talouarn, Astrid Marchal, Peng Zhang, Jeremy Manry, Yoann Seeleuthner, Yu Zhang, Alexandre Bolze, Matthieu Chaldebas, Baptiste Milisavljevic, Adrian Gervais, Paul Bastard, Takaki Asano, Lucy Bizien, Federica Barzaghi, Hassan Abolhassani, Ahmad Abou Tayoun, Alessandro Aiuti, Ilad Alavi Darazam, Luis Allende, Rebeca Alonso-Arias, Andrés Augusto Arias, Gokhan Aytekin, Peter Bergman, Simone Bondesan, Yenan Bryceson, Ingrid Bustos, Oscar Cabrera-Marante, Sheila Carcel, Paol..., Rare predicted loss-of-function variants of type I IFN immunity genes are associated with life-threatening COVID-19, Genome Medicine, 2023, 15 (1), pp.22. ⟨10.1186/s13073-023-01173-8⟩.

Cavard A, Redman E, Mercey O, Abelanet S, Plaisant M, Arguel MJ, Magnone V, Ruiz García S, Rios G, Deprez M, Lebrigand K, Ponzio G, Caballero I, Barbry P, Zaragosi LE, Marcet B, The MIR34B/C genomic region contains multiple potential regulators of multiciliogenesis., FEBS Lett 2023 Jun; 597(12): 1623-1637.

Guilbaud E, Barouillet T, Ilie M, Borowczyk C, Ivanov S, Sarrazy V, Vaillant N, Ayrault M, Castiglione A, Rignol G, Brest P, Bazioti V, Zaitsev K, Lebrigand K, Dussaud S, Magnone V, Bertolotto C, Marchetti S, Irondelle M, Goldberg I, Huby T, Westerterp M, Gautier EL, Mari B, Barbry P, Hofman P, Yvan-Charvet L, Cholesterol efflux pathways hinder KRAS-driven lung tumor progenitor cell expansion., Cell Stem Cell 2023 Jun; 30(6): 800-817.e9.

Zapletalová M, Rancurel C, Industri B, Bardin M, Le Brigand K, Nicot P, Magnone V, Seassau A, Barbry P, Potěšil D, Zdráhal Z, Ponchet M, Lochman J, BABA-induced pathogen resistance: a multi-omics analysis of the tomato response reveals a hyper-receptive status involving ethylene., Hortic Res 2023 Jun; 10(6): uhad068.

M. Truchi, G. Savary, K. Lebrigand, A. Baeri, C. Girard-Riboulleau, V. Magnone, S. Leroy, V. Hofman, P. Hofman, P. Barbry, S. Bellusci, C. Cauffiez, G. Vassaux, N. Pottier, B. Mari, Single-cell RNA-seq characterization of lung fibrosis resolution reveals a delayed capillary endothelial signature associated with alveolar regeneration in aged mice, J2R-2022 -Reims, Revue des Maladies Respiratoires, 40 (2), pp.142, 2023, ⟨10.1016/j.rmr.2022.11.063⟩.

Dolfi B, Gallerand A, Firulyova MM, Xu Y, Merlin J, Dumont A, Castiglione A, Vaillant N, Quemener S, Gerke H, Stunault MI, Schrank PR, Kim SH, Zhu A, Ding J, Gilleron J, Magnone V, Barbry P, Dombrowicz D, Duranton C, Wakkach A, Blin-Wakkach C, Becher B, Pagnotta S, Argüello RJ, Rantakari P, Chakarov S, Ginhoux F, Zaitsev K, Kim KW, Yvan-Charvet L, Guinamard RR, Williams JW, Ivanov S, Unravelling the sex-specific diversity and functions of adrenal gland macrophages., Cell Rep 2022 Jun; 39(11): 110949.

Feliz Morel ÁJ, Hasanovic A, Morin A, Prunier C, Magnone V, Lebrigand K, Aouad A, Cogoluegnes S, Favier J, Pasquier C, Mus-Veteau I, Persistent Properties of a Subpopulation of Cancer Cells Overexpressing the Hedgehog Receptor Patched., Pharmaceutics 2022 May; 14(5): .

Gallerand A, Stunault MI, Merlin J, Luehmann HP, Sultan DH, Firulyova MM, Magnone V, Khedher N, Jalil A, Dolfi B, Castiglione A, Dumont A, Ayrault M, Vaillant N, Gilleron J, Barbry P, Dombrowicz D, Mack M, Masson D, Bertero T, Becher B, Williams JW, Zaitsev K, Liu Y, Guinamard RR, Yvan-Charvet L, Ivanov S, Brown adipose tissue monocytes support tissue expansion., Nat Commun 2021 Sep; 12(1): 5255.

Arrighi N, Moratal C, Savary G, Fassy J, Nottet N, Pons N, Clément N, Fellah S, Larrue R, Magnone V, Lebrigand K, Pottier N, Dechesne C, Vassaux G, Dani C, Peraldi P, Mari B, The FibromiR miR-214-3p Is Upregulated in Duchenne Muscular Dystrophy and Promotes Differentiation of Human Fibro-Adipogenic Muscle Progenitors., Cells 2021 Jul; 10(7): .

Pandiani C, Strub T, Nottet N, Cheli Y, Gambi G, Bille K, Husser C, Dalmasso M, Béranger G, Lassalle S, Magnone V, Pédeutour F, Irondelle M, Maschi C, Nahon-Estève S, Martel A, Caujolle JP, Hofman P, LeBrigand K, Davidson I, Baillif S, Barbry P, Ballotti R, Bertolotto C, Single-cell RNA sequencing reveals intratumoral heterogeneity in primary uveal melanomas and identifies HES6 as a driver of the metastatic disease., Cell Death Differ 2021 Jun; 28(6): 1990-2000.

Leon LM, Gautier M, Allan R, Ilié M, Nottet N, Pons N, Paquet A, Lebrigand K, Truchi M, Fassy J, Magnone V, Kinnebrew G, Radovich M, Cheok MH, Barbry P, Vassaux G, Marquette CH, Ponzio G, Ivan M, Pottier N, Hofman P, Mari B, Rezzonico R, Correction: The nuclear hypoxia-regulated NLUCAT1 long non-coding RNA contributes to an aggressive phenotype in lung adenocarcinoma through regulation of oxidative stress., Oncogene 2021 Apr; 40(14): 2621.

Lebrigand K, Magnone V, Barbry P, Waldmann R, High throughput error corrected Nanopore single cell transcriptome sequencing., Nat Commun 2020 Aug; 11(1): 4025.

Deprez M, Zaragosi LE, Truchi M, Becavin C, Ruiz García S, Arguel MJ, Plaisant M, Magnone V, Lebrigand K, Abelanet S, Brau F, Paquet A, Pe'er D, Marquette CH, Leroy S, Barbry P, A Single-Cell Atlas of the Human Healthy Airways., Am J Respir Crit Care Med 2020 Dec; 202(12): 1636-1645.

Castagnola S, Cazareth J, Lebrigand K, Jarjat M, Magnone V, Delhaye S, Brau F, Bardoni B, Maurin T, Agonist-induced functional analysis and cell sorting associated with single-cell transcriptomics characterizes cell subtypes in normal and pathological brain., Genome Res 2020 Nov; 30(11): 1633-1642.

Cambien B, Lebrigand K, Baeri A, Nottet N, Compin C, Lamit A, Ferraris O, Peyrefitte CN, Magnone V, Henriques J, Zaragosi LE, Giorgetti-Peraldi S, Bost F, Gautier-Isola M, Rezzonico R, Barbry P, Barthel R, Mari B, Vassaux G, Identification of oncolytic vaccinia restriction factors in canine high-grade mammary tumor cells using single-cell transcriptomics., PLoS Pathog 2020 Oct; 16(10): e1008660.

Baranek T, Lebrigand K, de Amat Herbozo C, Gonzalez L, Bogard G, Dietrich C, Magnone V, Boisseau C, Jouan Y, Trottein F, Si-Tahar M, Leite-de-Moraes M, Mallevaey T, Paget C, High Dimensional Single-Cell Analysis Reveals iNKT Cell Developmental Trajectories and Effector Fate Decision., Cell Rep 2020 Sep; 32(10): 108116.

Moreno Leon L, Gautier M, Allan R, Ilié M, Nottet N, Pons N, Paquet A, Lebrigand K, Truchi M, Fassy J, Magnone V, Kinnebrew G, Radovich M, Cheok MH, Barbry P, Vassaux G, Marquette CH, Ponzio G, Ivan M, Pottier N, Hofman P, Mari B, Rezzonico R, The nuclear hypoxia-regulated NLUCAT1 long non-coding RNA contributes to an aggressive phenotype in lung adenocarcinoma through regulation of oxidative stress., Oncogene 2019 Nov; 38(46): 7146-7165.

Ruiz García S, Deprez M, Lebrigand K, Cavard A, Paquet A, Arguel MJ, Magnone V, Truchi M, Caballero I, Leroy S, Marquette CH, Marcet B, Barbry P, Zaragosi LE, Novel dynamics of human mucociliary differentiation revealed by single-cell RNA sequencing of nasal epithelial cultures., Development 2019 Oct; 146(20): .

Savary G, Dewaeles E, Diazzi S, Buscot M, Nottet N, Fassy J, Courcot E, Henaoui IS, Lemaire J, Martis N, Van der Hauwaert C, Pons N, Magnone V, Leroy S, Hofman V, Plantier L, Lebrigand K, Paquet A, Lino Cardenas CL, Vassaux G, Hofman P, Günther A, Crestani B, Wallaert B, Rezzonico R, Brousseau T, Glowacki F, Bellusci S, Perrais M, Broly F, Barbry P, Marquette CH, Cauffiez C, Mari B, Pottier N, The Long Noncoding RNA DNM3OS Is a Reservoir of FibromiRs with Major Functions in Lung Fibroblast Response to TGF-β and Pulmonary Fibrosis., Am J Respir Crit Care Med 2019 Jul; 200(2): 184-198.

Giovannini-Chami L, Paquet A, Sanfiorenzo C, Pons N, Cazareth J, Magnone V, Lebrigand K, Chevalier B, Vallauri A, Julia V, Marquette CH, Marcet B, Leroy S, Barbry P, The « one airway, one disease » concept in light of Th2 inflammation., Eur Respir J 2018 Oct; 52(4): .

Olivia Magnone, Influence de l’écornage sur le comportement du rhinocéros noir (Diceros bicornis) à l’état sauvage L’Influence of dehorning on the behaviour of the black rhinoceros (Diceros bicornis) into the wild, Médecine vétérinaire et santé animale. 2018.

Alexis Saintamand, Christelle Vincent-Fabert, Marie Marquet, Nour Ghazzaui, Virginie Magnone, Eric Pinaud, Michel Cogné, Yves Denizot, Eμ and 3’RR IgH enhancers show hierarchic unilateral dependence in mature B-cells, Scientific Reports, 2017, 7 (1), pp.442. ⟨10.1038/s41598-017-00575-0⟩.

Medina C, da Rocha M, Magliano M, Ratpopoulo A, Revel B, Marteu N, Magnone V, Lebrigand K, Cabrera J, Barcala M, Silva AC, Millar A, Escobar C, Abad P, Favery B, Jaubert-Possamai S, Characterization of microRNAs from Arabidopsis galls highlights a role for miR159 in the plant response to the root-knot nematode Meloidogyne incognita., New Phytol 2017 Nov; 216(3): 882-896.

Ponzio G, Rezzonico R, Bourget I, Allan R, Nottet N, Popa A, Magnone V, Rios G, Mari B, Barbry P, A new long noncoding RNA (lncRNA) is induced in cutaneous squamous cell carcinoma and down-regulates several anticancer and cell differentiation genes in mouse., J Biol Chem 2017 Jul; 292(30): 12483-12495.

Mercey O, Popa A, Cavard A, Paquet A, Chevalier B, Pons N, Magnone V, Zangari J, Brest P, Zaragosi LE, Ponzio G, Lebrigand K, Barbry P, Marcet B, Characterizing isomiR variants within the microRNA-34/449 family., FEBS Lett 2017 Mar; 591(5): 693-705.

Beclin C, Follert P, Stappers E, Barral S, Coré N, Chevigny A, Magnone V, Lebrigand K, Bissels U, Huylebroeck D, Bosio A, Barbry P, Seuntjens E, Cremer H, Corrigendum: miR-200 family controls late steps of postnatal forebrain neurogenesis via Zeb2 inhibition., Sci Rep 2016 Dec; 6(): 39368.

Beclin C, Follert P, Stappers E, Barral S, Coré N, de Chevigny A, Magnone V, Lebrigand K, Bissels U, Huylebroeck D, Bosio A, Barbry P, Seuntjens E, Cremer H, miR-200 family controls late steps of postnatal forebrain neurogenesis via Zeb2 inhibition., Sci Rep 2016 Oct; 6(): 35729.

Alexis Saintamand, Christelle Vincent-Fabert, Armand Garot, Pauline Rouaud, Zéliha Oruc, Virginie Magnone, Michel Cogné, Yves Denizot, Deciphering the importance of the palindromic architecture of the immunoglobulin heavy-chain 3’ regulatory region, Nature Communications, 2016, 7, pp.10730. ⟨10.1038/ncomms10730⟩.

Rouaud P, Fiancette R, Vincent-Fabert C, Magnone V, Cogné M, Dubus P, Denizot Y, Mantle cell lymphoma-like lymphomas in c-myc-3’RR/p53+/- mice and c-myc-3’RR/Cdk4R24C mice: differential oncogenic mechanisms but similar cellular origin., Oncotarget 2012 May; 3(5): 586-93.

Vincent-Fabert C, Fiancette R, Rouaud P, Baudet C, Truffinet V, Magnone V, Guillaudeau A, Cogné M, Dubus P, Denizot Y, A defect of the INK4-Cdk4 checkpoint and Myc collaborate in blastoid mantle cell lymphoma-like lymphoma formation in mice., Am J Pathol 2012 Apr; 180(4): 1688-701.

Fiancette R, Rouaud P, Vincent-Fabert C, Laffleur B, Magnone V, Cogné M, Denizot Y, A p53 defect sensitizes various stages of B cell development to lymphomagenesis in mice carrying an IgH 3′ regulatory region-driven c-myc transgene., J Immunol 2011 Dec; 187(11): 5772-82.

Ganot P, Moya A, Magnone V, Allemand D, Furla P, Sabourault C, Adaptations to endosymbiosis in a cnidarian-dinoflagellate association: differential gene expression and specific gene duplications., PLoS Genet 2011 Jul; 7(7): e1002187.

Puisségur MP, Mazure NM, Bertero T, Pradelli L, Grosso S, Robbe-Sermesant K, Maurin T, Lebrigand K, Cardinaud B, Hofman V, Fourre S, Magnone V, Ricci JE, Pouysségur J, Gounon P, Hofman P, Barbry P, Mari B, miR-210 is overexpressed in late stages of lung cancer and mediates mitochondrial alterations associated with modulation of HIF-1 activity., Cell Death Differ 2011 Mar; 18(3): 465-78.

Emboulé L, Daigle F, Meyer DF, Mari B, Pinarello V, Sheikboudou C, Magnone V, Frutos R, Viari A, Barbry P, Martinez D, Lefrançois T, Vachiéry N, Innovative approach for transcriptomic analysis of obligate intracellular pathogen: selective capture of transcribed sequences of Ehrlichia ruminantium., BMC Mol Biol 2009 Dec; 10(): 111.

L Emboule, F Daigle, R Frutos, D Meyer, Alain Viari, Valérie Pinarello, S Christian, V Magnone, Bernard Mari, P Barbry, D Martinez, Thierry Lefrançois, Nathalie Vachiery, High throughput analysis of Ehrlichia ruminantium transcriptome: identification of genes involved in virulence, 3rd Congress of European Microbiologist - FEMS, 2009, Gothenburg, Sweden. pp.Inconnu.

E Vautor, V Magnone, G Rios, K Le Brigand, Dominique Bergonier, Gérard Lina, H Meugnier, P Barbry, Richard Thiéry, Michel Pepin, Genetic differences among Staphylococcus aureus isolates from dairy ruminant species: A single-dye DNA microarray approach, Veterinary Microbiology, 2009, 133 (1-2), pp.105-114.

Albrecht V, Chevallier A, Magnone V, Barbry P, Vandenbos F, Bongain A, Lefebvre JC, Giordanengo V, Easy and fast detection and genotyping of high-risk human papillomavirus by dedicated DNA microarrays., J Virol Methods 2006 Nov; 137(2): 236-44.

Le Brigand K, Russell R, Moreilhon C, Rouillard JM, Jost B, Amiot F, Magnone V, Bole-Feysot C, Rostagno P, Virolle V, Defamie V, Dessen P, Williams G, Lyons P, Rios G, Mari B, Gulari E, Kastner P, Gidrol X, Freeman TC, Barbry P, An open-access long oligonucleotide microarray resource for analysis of the human and mouse transcriptomes., Nucleic Acids Res 2006 Jul; 34(12): e87.

Moreilhon C, Gras D, Hologne C, Bajolet O, Cottrez F, Magnone V, Merten M, Groux H, Puchelle E, Barbry P, Live Staphylococcus aureus and bacterial soluble factors induce different transcriptional responses in human airway cells., Physiol Genomics 2005 Feb; 20(3): 244-55.

Dayem MA, Moreilhon C, Turchi L, Magnone V, Christen R, Ponzio G, Barbry P, Early gene expression in wounded human keratinocytes revealed by DNA microarray analysis., Comp Funct Genomics 2003 ; 4(1): 47-55.

Patel AJ, Maingret F, Magnone V, Fosset M, Lazdunski M, Honoré E, TWIK-2, an inactivating 2P domain K+ channel., J Biol Chem 2000 Sep; 275(37): 28722-30.