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MINDev team: Microbiota, Immunity, and Neurodevelopment

Research in the Developmental Origins of Health and Disease (DOHaD) has clearly demonstrated that the gestational period and the first 2 years of life are critical for individuals’ future health, and in particular mental health. Several mental disorders have a clear neurodevelopmental origin, including the so-called neurodevelopmental disorders (NDD) diagnosed in early childhood (e.g. autism spectrum disorders (ASD) or attention deficits/hyperactivity), but also psychiatric disorders diagnosed later in life (e.g. depression, bipolarity, schizophrenia (SCZ)). All these diseases lead to lifelong impairments in everyday life and have heavy socio-economic costs and there is an urgent need to develop biomarkers and identify new therapeutic targets for these diseases.

NDD result from interactions between individual genetic predisposition and exposure to environmental risk factors, which may explain the great inter-individual heterogeneity in NDD clinical presentation. Aside from atypical or maladaptive behaviours, patients with NDD often exhibit gastrointestinal (GI) dysfunction, intestinal microbiota dysbiosis, and immune abnormalities such as abnormal serum cytokine levels. Preclinical studies have shown that both the gut microbiota and the immune system regulate neurodevelopmental processes, synaptic plasticity and brain functions, with long-term impact social and adaptive behaviors, cognition, stress response, and anxiety. While these data suggest that NDD behavioural alterations could result from an altered microbiota and/or immune alterations, the underlying molecular mechanisms remain to be elucidated. Also, biomarkers predictive of NDD risk or defining subtypes of NDD patients are generally lacking. Finally, identifying novel therapeutic targets to alleviate NDD behavioural deficits is critical.

Microbial metabolites produced by the microbiota have described pharmacological activities on host receptors or enzymes, and cytokines produced by immune cells and glial cells act on their cognate brain receptors. Our working hypothesis is that the effects of the microbiota and the immune system on neurodevelopment and behaviour are mediated by microbial metabolites and cytokines. To test this hypothesis, our translational and multidisciplinary research program is organized along two main research axes entitled “Gut microbiota, microbial metabolites and ASD” and “Immunity, cytokines and NDD”. Relevant to this hypothesis, our objectives are:

  • To assess the utility of microbial metabolites and cytokines as biomarkers for the diagnosis, prognosis, or stratification of psychiatric disorders with neurodevelopmental origin (ASD, SCZ, depression). To achieve this, we will perform association and prediction studies based on clinical data and biomarker measures (cytokines, metabolites) in biological samples from cohorts of psychiatric patients and children from the two French birth cohorts EDEN and ELFE.
  • To elucidate the pharmacological properties of endogenous microbial metabolites on host receptors and enzymes to understand how they can interfere with brain function to induce NDD. To achieve this, we will analyse the systemic, neurobiological and behavioural consequences of manipulating metabolite levels in mice and identify their molecular targets (enzyme, receptor);
  • To elucidate how dysregulation of cytokine signalling during neurodevelopment leads to NDD. To achieve this, we will analyse the neurodevelopmental consequences of candidate cytokines gain/loss-of-function in human brain organoids;
  • To propose novel therapeutic strategies for NDD targeting microbial metabolites (in mice) and the immune system (in human brain organoids and in a prospective clinical study).

Publications

2025
Fabregat-Safont D, Coadic L, Haro N, Montané-Garcia M, Canaguier J, Mallaret G, Davidovic L, Pozo ÓJ, Improving the detectability of low-abundance p-cresol in biological matrices by chemical derivatization and LC-MS/MS determination., Talanta 2025 Aug; 290(): 127770.
2025
Yuan WL, Cissé AH, Tafflet M, El Khoury E, Khalfallah O, Davidovic L, Charles MA, Heude B, The Adverse Influence of Maternal Glycaemia During Pregnancy on Offspring’s Cardiometabolic Health Profiles., Acta Paediatr 2025 Apr; (): .
2025
Canaguier J, Mallaret G, Paraschivescu C, Barbosa S, Le Merrer J, Becker J, Glaichenhaus N, Davidovic L, Perinatal exposure to the autism-linked metabolite p-Cresol has limited impact on early development in mice but lasting effects on adult social behavior., Sci Rep 2025 Apr; 15(1): 12934.
2025
Lion M, Ibrahim EC, Caccomo-Garcia E, Bourret J, Cinquanta G, Khalfallah O, Glaichenhaus N, Davidovic L, Courtet P, Turecki G, Tzavara E, Belzeaux R, A specific GPR56/ADGRG1 splicing isoform is associated with antidepressant response in major depressive disorder., Eur Neuropsychopharmacol 2025 Apr; 93(): 5-14.
2024
2024
Herbein M, Barbosa S, Collet O, Khalfallah O, Navarro M, Bailhache M, Iv N, Aouizerate B, Sutter-Dallay AL, Koehl M, Capuron L, Ellul P, Peyre H, Van der Waerden J, Melchior M, Côté S, Heude B, Glaichenhaus N, Davidovic L, Galera C, Cord serum cytokines at birth and children’s trajectories of mood dysregulation symptoms from 3 to 8 years: The EDEN birth cohort., Brain Behav Immun Health 2024 Jul; 38(): 100768.
2023
Strube W, Aksar A, Bauer I, Barbosa S, Benros M, Blankenstein C, Campana M, Davidovic L, Glaichenhaus N, Falkai P, Görlitz T, Hansbauer M, Heilig D, Khalfallah O, Leboyer M, Martinuzzi E, Mayer S, Moussiopoulou J, Papazova I, Perić N, Wagner E, Schneider-Axmann T, Simon J, Hasan A, Effects of add-on Celecoxib treatment on patients with schizophrenia spectrum disorders and inflammatory cytokine profile trial (TargetFlame): study design and methodology of a multicentre randomized, placebo-controlled trial., J Neural Transm (Vienna) 2023 Aug; 130(8): 1039-1048.
2023
Khalfallah O, Barbosa S, Phillippat C, Slama R, Galera C, Heude B, Glaichenhaus N, Davidovic L, Cytokines as mediators of the associations of prenatal exposure to phenols, parabens, and phthalates with internalizing behaviours at age 3 in boys: A mixture exposure and mediation approach., Environ Res 2023 Jul; 229(): 115865.
2022
Doré E, Joly-Beauparlant C, Morozumi S, Mathieu A, Lévesque T, Allaeys I, Duchez AC, Cloutier N, Leclercq M, Bodein A, Payré C, Martin C, Petit-Paitel A, Gelb MH, Rangachari M, Murakami M, Davidovic L, Flamand N, Arita M, Lambeau G, Droit A, Boilard E, The interaction of secreted phospholipase A2-IIA with the microbiota alters its lipidome and promotes inflammation, JCI Insight 2022 Jan; 7(2): .
2022
Cissé AH, Taine M, Tafflet M, de Lauzon-Guillain B, Clément K, Khalfallah O, Davidovic L, Lioret S, Charles MA, Heude B, Cord blood leptin level and a common variant of its receptor as determinants of the BMI trajectory: The EDEN mother-child cohort., Pediatr Obes 2022 Nov; 17(11): e12955.
2022
Foiselle M, Barbosa S, Godin O, Wu CL, Boukouaci W, Andre M, Aouizerate B, Berna F, Barau C, Capdevielle D, Vidailhet P, Chereau I, Davidovic L, Dorey JM, Dubertret C, Dubreucq J, Faget C, Fond G, Leigner S, Llorca PM, Mallet J, Misdrahi D, Martinuzzi E, Passerieux C, Rey R, Pignon B, Urbach M, Schürhoff F, Glaichenhaus N, Leboyer M, Tamouza R, Immuno-metabolic profile of patients with psychotic disorders and metabolic syndrome. Results from the FACE-SZ cohort., Brain Behav Immun Health 2022 Jul; 22(): 100436.
2022
Radmanish M, Khalfallah O, Glaichenhaus N, Forhan A, Heude B, Charles MA, Davidovic L, Plancoulaine S, Sleep duration trajectories associated with levels of specific serum cytokines at age 5: A longitudinal study in preschoolers from the EDEN birth cohort., Brain Behav Immun Health 2022 May; 21(): 100429.
2022
2022
2022
2022
Paraschivescu C, Barbosa S, Van Steenwinckel J, Gressens P, Glaichenhaus N, Davidovic L, Early Life Exposure to Tumor Necrosis Factor Induces Precocious Sensorimotor Reflexes Acquisition and Increases Locomotor Activity During Mouse Postnatal Development., Front Behav Neurosci 2022 ; 16(): 845458.
2022
Khandjian EW, Robert C, Davidovic L, FMRP, a multifunctional RNA-binding protein in quest of a new identity., Front Genet 2022 ; 13(): 976480.
2022
Khalfallah O, Barbosa S, Martinuzzi E, Davidovic L, Yolken R, Glaichenhaus N, Monitoring inflammation in psychiatry: Caveats and advice., Eur Neuropsychopharmacol 2022 Jan; 54(): 126-135.
2022
Gros M, Nunes AM, Daoudlarian D, Pini J, Martinuzzi E, Barbosa S, Ramirez M, Puma A, Villa L, Cavalli M, Grecu N, Garcia J, Siciliano G, Solé G, Juntas-Morales R, Jones PL, Jones T, Glaichenhaus N, Sacconi S, Identification of Serum Interleukin 6 Levels as a Disease Severity Biomarker in Facioscapulohumeral Muscular Dystrophy., J Neuromuscul Dis 2022 ; 9(1): 83-93.
2021
Massa F, Cremoni M, Gérard A, Grabsi H, Rogier L, Blois M, Couzin C, Hassen NB, Rouleau M, Barbosa S, Martinuzzi E, Fayada J, Bernard G, Favre G, Hofman P, Esnault VLM, Czerkinsky C, Seitz-Polski B, Glaichenhaus N, Sicard A, Safety and cross-variant immunogenicity of a three-dose COVID-19 mRNA vaccine regimen in kidney transplant recipients., EBioMedicine 2021 Nov; 73(): 103679.
2021
Gonzales J, Marchix J, Aymeric L, Le Berre-Scoul C, Zoppi J, Bordron P, Burel M, Davidovic L, Richard JR, Gaman A, Lejuste F, Brouillet JZ, Le Vacon F, Chaffron S, Leboyer M, Boudin H, Neunlist M, Fecal Supernatant from Adult with Autism Spectrum Disorder Alters Digestive Functions, Intestinal Epithelial Barrier, and Enteric Nervous System., Microorganisms 2021 Aug; 9(8): .
2021
2021
Bermudez-Martin P, Becker JAJ, Caramello N, Fernandez SP, Costa-Campos R, Canaguier J, Barbosa S, Martinez-Gili L, Myridakis A, Dumas ME, Bruneau A, Cherbuy C, Langella P, Callebert J, Launay JM, Chabry J, Barik J, Le Merrer J, Glaichenhaus N, Davidovic L, The microbial metabolite p-Cresol induces autistic-like behaviors in mice by remodeling the gut microbiota., Microbiome 2021 Jul; 9(1): 157.
2021
Martinuzzi E, Barbosa S, Courtet P, Olié E, Guillaume S, Ibrahim EC, Daoudlarian D, Davidovic L, Glaichenhaus N, Belzeaux R, Blood cytokines differentiate bipolar disorder and major depressive disorder during a major depressive episode: Initial discovery and independent sample replication., Brain Behav Immun Health 2021 May; 13(): 100232.
2021
Galera C, Barbosa S, Collet O, Khalfallah O, Aouizerate B, Sutter-Dalley AL, Koehl M, Capuron L, Van der Waerden J, Melchior M, Côté S, Heude B, Glaichenhaus N, Davidovic L, Cord Serum Cytokines at Birth and Children’s Anxiety-Depression Trajectories From 3 to 8 Years: The EDEN Mother-Child Cohort., Biol Psychiatry 2021 Mar; 89(6): 541-549.
2021
Nalpas N, Hoyles L, Anselm V, Ganief T, Martinez-Gili L, Grau C, Droste-Borel I, Davidovic L, Altafaj X, Dumas ME, Macek B, An integrated workflow for enhanced taxonomic and functional coverage of the mouse fecal metaproteome., Gut Microbes 2021 ; 13(1): 1994836.
2020
Barbosa S, Khalfallah O, Forhan A, Galera C, Heude B, Glaichenhaus N, Davidovic L, Immune activity at birth and later psychopathology in childhood., Brain Behav Immun Health 2020 Oct; 8(): 100141.
2020
Barbosa S, Khalfallah O, Forhan A, Galera C, Heude B, Glaichenhaus N, Davidovic L, Serum cytokines associated with behavior: A cross-sectional study in 5-year-old children., Brain Behav Immun 2020 Jul; 87(): 377-387.
2020
Van Dijck A, Barbosa S, Bermudez-Martin P, Khalfallah O, Gilet C, Martinuzzi E, Elinck E, Kooy RF, Glaichenhaus N, Davidovic L, Reduced serum levels of pro-inflammatory chemokines in fragile X syndrome., BMC Neurol 2020 Apr; 20(1): 138.
2020
Paraschivescu C, Barbosa S, Lorivel T, Glaichenhaus N, Davidovic L, Cytokine changes associated with the maternal immune activation (MIA) model of autism: A penalized regression approach., PLoS One 2020 ; 15(8): e0231609.
2019
Martinuzzi E, Barbosa S, Daoudlarian D, Ali WBH, Gilet C, Fillatre L, Khalfallah O, Troudet R, Jamain S, Fond G, Sommer I, Leucht S, Dazzan P, McGuire P, Arango C, Diaz-Caneja CM, Fleischhacker W, Rujescu D, Glenthøj B, Winter I, Kahn RS, Yolken R, Lewis S, Drake R, Davidovic L, Leboyer M, Glaichenhaus N, Correction: Stratification and prediction of remission in first-episode psychosis patients: the OPTiMiSE cohort study., Transl Psychiatry 2019 Jun; 9(1): 171.
2019
Leboucher A, Pisani DF, Martinez-Gili L, Chilloux J, Bermudez-Martin P, Van Dijck A, Ganief T, Macek B, Becker JAJ, Le Merrer J, Kooy RF, Amri EZ, Khandjian EW, Dumas ME, Davidovic L, The translational regulator FMRP controls lipid and glucose metabolism in mice and humans., Mol Metab 2019 Mar; 21(): 22-35.
2019
Martinuzzi E, Barbosa S, Daoudlarian D, Bel Haj Ali W, Gilet C, Fillatre L, Khalfallah O, Troudet R, Jamain S, Fond G, Sommer I, Leucht S, Dazzan P, McGuire P, Arango C, Diaz-Caneja CM, Fleischhacker W, Rujescu D, Glenthøj B, Winter I, Kahn RS, Yolken R, Lewis S, Drake R, Davidovic L, Leboyer M, Glaichenhaus N, Stratification and prediction of remission in first-episode psychosis patients: the OPTiMiSE cohort study., Transl Psychiatry 2019 Jan; 9(1): 20.
2019
Leboucher A, Bermudez-Martin P, Mouska X, Amri EZ, Pisani DF, Davidovic L, Fmr1-Deficiency Impacts Body Composition, Skeleton, and Bone Microstructure in a Mouse Model of Fragile X Syndrome., Front Endocrinol (Lausanne) 2019 ; 10(): 678.
2017
Khalfallah O, Jarjat M, Davidovic L, Nottet N, Cestèle S, Mantegazza M, Bardoni B, Depletion of the Fragile X Mental Retardation Protein in Embryonic Stem Cells Alters the Kinetics of Neurogenesis., Stem Cells 2017 Feb; 35(2): 374-385.
2016
El Fatimy R, Davidovic L, Tremblay S, Jaglin X, Dury A, Robert C, De Koninck P, Khandjian EW, Tracking the Fragile X Mental Retardation Protein in a Highly Ordered Neuronal RiboNucleoParticles Population: A Link between Stalled Polyribosomes and RNA Granules., PLoS Genet 2016 Jul; 12(7): e1006192.
2015
Maurin T, Melko M, Abekhoukh S, Khalfallah O, Davidovic L, Jarjat M, D'Antoni S, Catania MV, Moine H, Bechara E, Bardoni B, The FMRP/GRK4 mRNA interaction uncovers a new mode of binding of the Fragile X mental retardation protein in cerebellum., Nucleic Acids Res 2015 Sep; 43(17): 8540-50.
2015
Dumas ME, Davidovic L, Metabolic Profiling and Phenotyping of Central Nervous System Diseases: Metabolites Bring Insights into Brain Dysfunctions., J Neuroimmune Pharmacol 2015 Sep; 10(3): 402-24.
2015
Vicario A, Colliva A, Ratti A, Davidovic L, Baj G, Gricman Ł, Colombrita C, Pallavicini A, Jones KR, Bardoni B, Tongiorgi E, Dendritic targeting of short and long 3′ UTR BDNF mRNA is regulated by BDNF or NT-3 and distinct sets of RNA-binding proteins., Front Mol Neurosci 2015 ; 8(): 62.
2014
Matic K, Eninger T, Bardoni B, Davidovic L, Macek B, Quantitative phosphoproteomics of murine Fmr1-KO cell lines provides new insights into FMRP-dependent signal transduction mechanisms., J Proteome Res 2014 Oct; 13(10): 4388-97.
2013
Zongaro S, Hukema R, D'Antoni S, Davidovic L, Barbry P, Catania MV, Willemsen R, Mari B, Bardoni B, The 3′ UTR of FMR1 mRNA is a target of miR-101, miR-129-5p and miR-221: implications for the molecular pathology of FXTAS at the synapse., Hum Mol Genet 2013 May; 22(10): 1971-82.
2013
Davidovic L, Durand N, Khalfallah O, Tabet R, Barbry P, Mari B, Sacconi S, Moine H, Bardoni B, A novel role for the RNA-binding protein FXR1P in myoblasts cell-cycle progression by modulating p21/Cdkn1a/Cip1/Waf1 mRNA stability., PLoS Genet 2013 Mar; 9(3): e1003367.
2013
Dumas ME, Davidovic L, Metabolic phenotyping and systems biology approaches to understanding neurological disorders., F1000Prime Rep 2013 ; 5(): 18.
2011
2009
Shi H, Chen S, Jin H, Xu C, Dong G, Zhao Q, Wang W, Zhang H, Lin W, Zhang J, Davidovic L, Yao L, Fan D, Downregulation of MSP58 inhibits growth of human colorectal cancer cells via regulation of the cyclin D1-cyclin-dependent kinase 4-p21 pathway., Cancer Sci 2009 Sep; 100(9): 1585-90.
2009
Bensaid M, Melko M, Bechara EG, Davidovic L, Berretta A, Catania MV, Gecz J, Lalli E, Bardoni B, FRAXE-associated mental retardation protein (FMR2) is an RNA-binding protein with high affinity for G-quartet RNA forming structure., Nucleic Acids Res 2009 Mar; 37(4): 1269-79.
2009
Bechara EG, Didiot MC, Melko M, Davidovic L, Bensaid M, Martin P, Castets M, Pognonec P, Khandjian EW, Moine H, Bardoni B, A novel function for fragile X mental retardation protein in translational activation., PLoS Biol 2009 Jan; 7(1): e16.
2009
Lin W, Zhang J, Zhang J, Liu X, Fei Z, Li X, Davidovic L, Tang Z, Shen L, Deng Y, Yang A, Han H, Zhang X, Yao L, RNAi-mediated inhibition of MSP58 decreases tumour growth, migration and invasion in a human glioma cell line., J Cell Mol Med 2009 ; 13(11-12): 4608-22.
2008
2007
Davidovic L, Jaglin XH, Lepagnol-Bestel AM, Tremblay S, Simonneau M, Bardoni B, Khandjian EW, The fragile X mental retardation protein is a molecular adaptor between the neurospecific KIF3C kinesin and dendritic RNA granules., Hum Mol Genet 2007 Dec; 16(24): 3047-58.
2007
Bechara E, Davidovic L, Melko M, Bensaid M, Tremblay S, Grosgeorge J, Khandjian EW, Lalli E, Bardoni B, Fragile X related protein 1 isoforms differentially modulate the affinity of fragile X mental retardation protein for G-quartet RNA structure., Nucleic Acids Res 2007 ; 35(1): 299-306.
2006
Davidovic L, Bechara E, Gravel M, Jaglin XH, Tremblay S, Sik A, Bardoni B, Khandjian EW, The nuclear microspherule protein 58 is a novel RNA-binding protein that interacts with fragile X mental retardation protein in polyribosomal mRNPs from neurons., Hum Mol Genet 2006 May; 15(9): 1525-38.
2006
Bardoni B, Davidovic L, Bensaid M, Khandjian EW, The fragile X syndrome: exploring its molecular basis and seeking a treatment., Expert Rev Mol Med 2006 Apr; 8(8): 1-16.
2006
Davidovic L, Tremblay S, Gravel M, De Koninck P, Khandjian EW, [The fragile X syndrome: one protein missing and 1001 disoriented mRNAs]., Med Sci (Paris) 2006 Jan; 22(1): 41-6.
2006
Plante I, Davidovic L, Ouellet DL, Gobeil LA, Tremblay S, Khandjian EW, Provost P, Dicer-derived microRNAs are utilized by the fragile X mental retardation protein for assembly on target RNAs., J Biomed Biotechnol 2006 ; 2006(4): 64347.
2005
Huot ME, Bisson N, Davidovic L, Mazroui R, Labelle Y, Moss T, Khandjian EW, The RNA-binding protein fragile X-related 1 regulates somite formation in Xenopus laevis., Mol Biol Cell 2005 Sep; 16(9): 4350-61.
2005
Davidovic L, Huot ME, Khandjian EW, Lost once, the Fragile X Mental Retardation protein is now back onto brain polyribosomes., RNA Biol 2005 Jan; 2(1): 1-3.
2004
2004
Khandjian EW, Huot ME, Tremblay S, Davidovic L, Mazroui R, Bardoni B, Biochemical evidence for the association of fragile X mental retardation protein with brain polyribosomal ribonucleoparticles., Proc Natl Acad Sci U S A 2004 Sep; 101(36): 13357-62.
2003
Koonin EV, Makarova KS, Rogozin IB, Davidovic L, Letellier MC, Pellegrini L, The rhomboids: a nearly ubiquitous family of intramembrane serine proteases that probably evolved by multiple ancient horizontal gene transfers., Genome Biol 2003 ; 4(3): R19.