Free scripts for ImageJ software
Create you own script with the ImageJ Macroblocks generator
csd_analysis
Analysis of a intrinsic optical signal from brain slices for Cortical Spreading Depression (Fiji macro).
Microscope_Scale
Macro to set the global scale according to the used microscope and objective.
Gel_analysis
Macro for quantifying gels (or any black spots on a white background). More explanations
Intensity_objects
Analyse series of images and perform multiple objects measurements. More explanations
Measure_length
Analyse series of images and perform multiple length measurements. More explanations
Histo_arteries
Macro for detecting and measuring external (ex: adventis) and internal (ex: intima) perimeter and area of a ring-like structure (ex: artery). More explanations
Histo_surfaces
Macro for calculating empty surfaces on histological slices (ex: tubules in a kidney). More explanations
Metafluor_intensity_2images
Macro to measure mean intensity of one large object (ex: artery) at two wavelength (pairs of images), using each image to create a mask and measuring both images with both masks. More explanations
Color_images
Analyse series of 3 greyscale images taken through red, green, and blue filters (ex: GFP, Hcred, Dapi) (metafluor format) to construct a color image (with or without a fourth fluorescent image). More explanations